学长云pc版下载-outline

Gene-by-gene population annotation and analysis

BIGSdb is software designed to store and analyse sequence data for bacterial isolates. Any number of sequences can be linked to isolate records - these can be small contigs assembled from dideoxy sequencing through to whole genomes (complete or multiple contigs generated from parallel sequencing technologies such as 454 or Illumina).

BIGSdb extends the principle of MLST to genomic data, where large numbers of loci can be defined, with alleles assigned by reference to sequence definition databases (which can also be set up with BIGSdb). Loci can also be grouped into schemes so that types can be defined by combinations of allelic profiles, a concept analagous to MLST.

The software has been released under the GNU General Public Licence version 3. The latest version of this documentation can be found at http://usm69b.wcbzw.com/.

  • Concepts and terms
    • BIGSdb
    • Loci
    • Alleles
    • Schemes
    • Profiles
    • Classification groups
    • Sequence tags
    • Sets
  • BIGSdb dependencies
    • Required packages
  • Installation and configuration of BIGSdb
    • Software installation
    • Configuring PostgreSQL
    • Setting global connection parameters
    • Site-specific configuration
    • Setting up the offline job manager
    • Setting up the submission system
    • Setting up a site-wide user database
    • Periodically delete temporary files
    • Prevent preference database getting too large
    • Log file rotation
    • Upgrading BIGSdb
    • Running the BIGSdb RESTful interface
  • 大陆看youtube
    • Creating databases
    • Database-specific configuration
    • XML configuration attributes used in config.xml
    • Over-riding global defaults set in bigsdb.conf
    • Over-riding values set in config.xml
    • 国内怎么上youtube网站
    • Sparsely-populated fields
    • Kiosk mode
    • User authentication
    • Setting up the admin user
    • Retrieving PubMed citations from NCBI
    • Configuring access to remote contigs
  • 国内怎么上youtube网站
    • Types of user
    • User groups
    • Curator permissions
    • Locus and scheme permissions (sequence definition database)
    • Controlling access
    • Setting user passwords
    • Setting the first user password
    • Enabling plugins
    • Temporarily disabling database updates
    • 国内怎么上youtube网站
    • Improving performance
    • Dataset partitioning
    • Setting a site-wide users database
    • Adding new loci
    • Defining locus extended attributes
    • Defining schemes
    • Organizing schemes into hierarchical groups
    • Setting up client databases
    • Rule-based sequence queries
    • Workflow for setting up a MLST scheme
    • Automated assignment of scheme profiles
    • Scheme profile clustering - setting up classification schemes
    • Defining new loci based on annotated reference genome
    • Genome filtering
    • Setting locus genome positions
    • Defining composite fields
    • Extended provenance attributes (lookup tables)
    • Sequence bin attributes
    • Checking external database configuration settings
    • Exporting table configurations
    • 国外视频网站网址大全_百度文库:2021-2-5 · 国外视频网站网址大全_艺术_高等教育_教育专区 69404人阅读|601次下载 国外视频网站网址大全_艺术_高等教育_教育专区。国外视频网站网址大全 YouTube 是全球著名的视频网站，可供网民上载观看及分享短片，至今它已成 为同类型网站的翘楚 著名 ...
    • BLAST caches
    • Config-specific file downloads
  • Curator’s guide
    • Adding new sender details
    • Adding new allele sequence definitions
    • Updating and deleting allele sequence definitions
    • Retiring allele identifiers
    • Updating locus descriptions
    • Adding new scheme profile definitions
    • YouTube 十五周年：一个失败的约会网站，如何成为了在线 ...:2021-5-16 · 在线视频之王：YouTube 划重点： 失败的约会网站 的副产品意外地火了 贾斯汀·比伯从YouTube的崛起为后者改变音乐和音乐产业提供了铺垫 专不专业清 ...
    • Retiring scheme profile definitions
    • Adding isolate records
    • Updating and deleting single isolate records
    • Batch updating multiple isolate records
    • Deleting multiple isolate records
    • Retiring isolate identifiers
    • Setting alternative names for isolates (aliases)
    • Linking isolate records to publications
    • Uploading sequence contigs linked to an isolate record
    • Youtuber必备必收藏的12个工具/网站（全） - 知乎:Youtube搜索框搜索“learn english”弹出的相关词，Google搜索同。用法2：在搜索结果里找到历史数据较好或者近期数据较好的相关视频，先对这些视频的截图、标题、描述、标签众及频道特征简单分析，再把某些突出特征或关键词用到自己的视频里。 用法3：直接在Google中搜索关键字，查看是否有视频 ...
    • Linking remote contigs to isolate records
    • Automated web-based sequence tagging
    • Projects
    • Isolate record versioning
  • Curating data submitted via the automated submission system
    • 如何登陆youtube
    • Profiles
    • 如何登陆youtube
  • Offline curation tools
    • Automated offline sequence tagging
    • Defining exemplar alleles
    • Automated offline allele definition
    • Cleanly interrupting offline curation
    • Uploading contigs from the command line
  • Definition downloads
    • Allele sequence definitions
    • Scheme profile definitions
  • Data records
    • Isolate records
    • 安卓手机怎么上youtube网站
    • Sequence tag records
    • Profile records
    • Sequence bin records
  • Querying data
    • Querying sequences to determine allele identity
    • Querying multiple sequences to identify allele identities
    • Searching for specific allele definitions
    • Browsing scheme profile definitions
    • Querying scheme profile definitions
    • Identifying allelic profile definitions
    • Batch profile queries
    • Investigating allele differences
    • Browsing isolate data
    • Querying isolate data
    • Querying by allelic profile
    • Retrieving isolates by linked publication
    • 大陆看youtube
  • User projects
    • Adding isolates to a user project following a query
    • Adding or removing isolates belonging to a user project by editing a list
    • Accessing project isolates
    • Allowing other users to share your project
    • Deleting a user project
  • Private records
    • Uploading private records
    • Modifying private records
    • 【分析向】对比Youtube，B站要成为中国最大的视频网站 ...:2021-2-23 · 各位抱歉，经评论区提醒，关于李子柒收入部分计算出错了，但不影响整体结论。已经在视频中做了说明。B站想要成为中国的YouTube，在产品、技术和商业上，都要作出巨大的提升。众UGC内容的基本盘的B站，对手是抖音、快手。小破站的破圈层之 ...
  • 手机怎么上youtube网站
    • BLAST
    • BURST
    • Codon usage
    • Field breakdown
    • Gene Presence
    • Genome comparator
    • GrapeTree
    • In silico PCR
    • Interactive Tree of Life (iTOL)
    • Locus explorer
    • Microreact
    • PhyloViz
    • Polymorphisms
    • Species identification
    • Sequence bin breakdown
    • Two field breakdown
    • Unique combinations
  • Data export plugins
    • Contig export
    • Isolate record export
    • Profile export
    • 大陆看youtube
  • Submitting data using the submission system
    • Registering a user account
    • Allele submission
    • Profile submission
    • Isolate submission
    • 安卓手机怎么上youtube网站
    • Removing submissions from your notification list
  • 极简插件_Chrome扩展插件商店_优质crx应用:极简插件网站是Chrome浏览器扩展插件的搬运工。严选有趣、实用、适合国内的Chrome扩展插件。致力于降低使用Chrome扩展插件的门槛，用非常简单的方式来提升用户体验。承蒙客官大驾光临，通过点赞、打赏可众帮助小站长期生存。
    • Passing additional/optional parameters
    • Paging using request headers
    • Resources
    • Authentication
  • Frequently asked questions (FAQs)
    • General
    • Installation
    • Administration
  • Appendix
    • Query operators
    • 国内怎么上youtube网站
    • Allele sequence flags
  • Database schema